Tutorials

This section contains various tutorials showcasing brain tissue extraction with BEN.

Interface

Codes for neuroimaging analysis via Matlab, Python(Nipype) and shell scripting.

As skull stripping is usually the first preprocessing step in the most pipelines, BEN can be used as a tool independently or called in shell scripts to work with other neuroimaging tool synergistically.

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(Registration comparision)Volumetric_quantification

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Using BEN with Nipype

Try your data

Feel free to try your data or deploy BEN to your preprocessing pipeline. Details can be found in notebook.